Genome Editing Metadata Builder

Fill in each section to generate a compliant .gem file.

Submission Details

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Experiment Title

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A name that relates key features of the experiment

Point‑of‑Contact Name

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Name of the person submitting this metadata record

Point‑of‑Contact Email

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Email address of the person submitting this metadata record

Laboratory Name

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Name for the laboratory that performed the editing experiment

Laboratory ID

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Unique identifier for the laboratory that performed the editing experiment

Role

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Role of the person submitting this metadata record, e.g., PI, lab manager. Useful to interpret your perspective.

Full Name

External ID TypeExternal ID Value

Internal ID

Experiment

Description

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Narrative description of the experiment

Source

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Source for data files or material

Conception

Objectives

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The motivation that determines a particular choice of system, methods, target

Design Plan

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An initial design implicating targets and tools, along with software used in design

Design Decision

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An explanation for the experimental plan based on the conception and initial design

Full Name

External ID TypeExternal ID Value

Internal ID

Experimental Design

Number of Positive Controls

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The number of positive controls, e.g., 2

Description of Positive Controls

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Positive control kit from vendor X

Number of Negative Controls

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The number of negative controls, e.g., 5

Description of Negative Controls

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e.g., scrambled gRNA

Number of Biological Replicates

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The number of biological replicates, e.g., 2

Description of Biological Replicates

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A description of the biological replicates

Number of Technical Replicates

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The number of technical replicates, e.g., 2

Description of Technical Replicates

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e.g., sequencing from each biological replicate

Text Description

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Narrative description of the experimental design specifying controls and replicates

Full Name

External ID TypeExternal ID Value

Internal ID

Delivery Agent

Delivery Agent Type

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The type of delivery agent, e.g., nanoparticle or virus-like particle

Source

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Source for data files or material

Delivery Agent Description

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A description of the delivery agent, e.g., shuttle peptide with sequence LLKIW...

Full Name

External ID TypeExternal ID Value

Internal ID

Biological System

Biological System Type

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The type of biological system (organism, tissue, cell model, etc.)

Species Name

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Primary name for the species, e.g., Homo sapiens

Sex

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Sex of the biological material if assigned, e.g., F

Source

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Source for the material (catalog, lab-made, gift, etc.)

System Description

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Narrative description of the biological system, including context and usage

Strain Name

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Primary name for the strain of the biological system

Annotated Map

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Annotated map file or identifier (e.g., annotated GenBank)

Transgene Reporter Name

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Name of the transgene reporter, e.g., tdTomato

Transgene Reporter DB IDs

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External database IDs for the reporter (UniProt, Fluorophore, etc.)

Transgene Description

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Description of the transgenic system (how it was introduced, selection, etc.)

Transgene Description String

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Compact description, e.g., CAG-lox-stop-lox-tdTomato-PGK-Puro

Transgene System Type

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e.g., Integrated NHEJ Reporter, Transient NHEJ Reporter

Species Aliases

Strain Aliases

Full Name

External ID TypeExternal ID Value

Internal ID

Experimental Data

Cell Type

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The type of a differentiated cell, e.g., astrocyte

Tissue Type

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The type of a differentiated tissue, e.g., cerebellum

Organ Type

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The type of organ, e.g., brain

Delivery Efficiency

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Comma‑separated values per replicate or qualitative terms (present/absent)

Editing Efficiency

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Comma‑separated values per replicate or qualitative terms (present/absent)

Replicates

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Number of biological or delivery replicates

Description

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Narrative description of the experimental data set

Source

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Source for data files or material

Full Name

External ID TypeExternal ID Value

Internal ID

Full Name

External ID TypeExternal ID Value

Internal ID

General Feedback

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Any feedback on the form builder or schema contents is welcome.

Contact contact@edilytics.com for further feedback on the design of the form builder or schema contents